Guides

Upload and Manage Data

Bring your own data to Lumin.

Suggest Edits

Lumin allows upload and usage of custom data throughout various visualization tools.

The currently accepted files are CSV and JSON. For files to be adequately processed, they must
include headers/keys with existing row values. An example of valid file formats is shown below.

Tumor Models Drug Study Data Expression Counts
Accepted
Column Headers
  • - Sample
  • - Cancer type
  • - Harvest site
  • - Site type
  • - Treatment
  • - History
  • - Gender
    		•
  • - Model
  • - Agent
  • - TGI or IC50
    		•
  • - Model
  • - Cancer type
  • - Gene
  • - RPKM
    		•
  • - Gene
  • - CTG-... (*models)
    		•
    S3 Folders tumor-models drug-study expression counts

    Data supplied by clients is required to exist within the clients bucket.
    For example, a client with the ID 99 will have a bucket called championsoncology.client-99.

    For data that is open to all users within the client company, all the folders listed above
    will live at the root folder of the bucket.

    Data that is open to only one particular user will require a folder to be created at the root
    of the bucket with the user ID. For example, a client with the ID 99 and a user with the ID 100
    that is uploading expression data will have their data live in the following file format:
    championsoncology.client-99/100/expression

    Finally, the user data management page should employ an S3 file-like structure which displays all data
    available to the user, either through their own upload or through the champions oncology upload
    page to the users bucket.

    2878

    Updated about 2 years ago