Data Licensing

Request and download rich multi-omic data for Champions Oncology's PDX bank and cell lines

Data Licensing allows Lumin users to use Tokens to request multi-omic data, which can be downloaded into their own environment for further analysis.

Getting Started with Data Licensing

After opening Data Licensing from the Lumin Homepage user's simply complete the report for to request the data for their models of interest.

Data Licensing Page

Available Data Types

• RNASeq -
  • RNA expression data
  • Fusion data
• WES
  • Copy number variation
  • Mutation data
• Proteomics
  • Protein abundance data
  • Phosphorylation events
  • Predicted kinase activity

Example scripts for data analysis

File Name	Topics
ccle_heatmap__R.ipynb	Importing data from the Broad Institute's depmap portal; hierarchical clustering
correlation_between_genes_R.ipynb	Correlation between genes regarding the expression data
dge_cancer_types_R.ipynb	Differential gene expression between cancer types
differential_protein_expression_R.ipynb	Normalization of proteomic data; volcano plot of fold change and P values
gene_signature_R.ipynb	Gene signature regarding the treated and naive groups
gsea_R.ipynb	Pathway enrichment analysis
gsva_kegg_pathways_in_R.ipynb	Importing pathways from MSigDB; GSVA analysis; DGE with limma
pca_ica_umap_R.ipynb	Comparing PCA, ICA, and UMAP for the gene-expression data
sensitivity_profiles_Achilles_Data_R.ipynb	Importing data from the Broad Institute's depmap portal; static plotting of sensitivity scores
ssGSEA_R.ipynb	Single-sample pathway enrichment analysis
t-SNE_R.ipynb	Heatmap and t-SNE of the gene-expression data
wgcna_R.ipynb	Gene co-expression analysis
interative_heatmap_Python.ipynb	Enabling interactive widgets; creating clustered heatmaps